Index _ | A | B | C | D | E | F | G | H | I | L | M | N | P | Q | R | S | T | U | W _ __init__() (BulkWearableFeatures method), [1] (CosinorAge method), [1] (DataHandler method) (GalaxyDataHandler method) (GenericDataHandler method) (NHANESDataHandler method) (UKBDataHandler method) (WearableFeatures method), [1] A acceleration_data_to_dataframe() (in module cosinorage.datahandlers.utils.galaxy_binary) activity_metrics() (in module cosinorage.features.utils.physical_activity_metrics) apply_sleep_wake_predictions() (in module cosinorage.features.utils.sleep_metrics) B BulkWearableFeatures (class in cosinorage.features) (class in cosinorage.features.bulk_features) C calc_weartime() (in module cosinorage.datahandlers.utils.wear_detection) calculate_enmo() (in module cosinorage.datahandlers.utils.calc_enmo) calculate_measure_time() (in module cosinorage.datahandlers.utils.nhanes) calculate_minute_level_enmo() (in module cosinorage.datahandlers.utils.calc_enmo) calibrate_accelerometer() (in module cosinorage.datahandlers.utils.calibration) clean_data() (in module cosinorage.datahandlers.utils.nhanes) cosinor_age_inputs (BulkWearableFeatures attribute), [1] cosinor_model() (in module cosinorage.features.utils.cosinor_analysis) cosinor_multiday() (in module cosinorage.features.utils.cosinor_analysis) CosinorAge (class in cosinorage.bioages) (class in cosinorage.bioages.cosinorage) cosinorage.bioages module cosinorage.datahandlers module cosinorage.features module D dashboard() (in module cosinorage.features) (in module cosinorage.features.utils.dashboard) data_columns (GalaxyDataHandler attribute) (GenericDataHandler attribute) data_format (GalaxyDataHandler attribute) (GenericDataHandler attribute) data_type (GalaxyDataHandler attribute) (GenericDataHandler attribute) DataHandler (class in cosinorage.datahandlers.datahandler) detect_frequency_from_timestamps() (in module cosinorage.datahandlers.utils.frequency_detection) detect_wear_periods() (in module cosinorage.datahandlers.utils.wear_detection) distribution_stats (BulkWearableFeatures attribute), [1] E eid (UKBDataHandler attribute) F failed_handlers (BulkWearableFeatures attribute), [1] feature_dict (WearableFeatures attribute), [1] features_args (BulkWearableFeatures attribute), [1] (WearableFeatures attribute), [1] file_path (GenericDataHandler attribute) filter_and_preprocess_nhanes_data() (in module cosinorage.datahandlers.utils.nhanes) filter_consecutive_days() (in module cosinorage.datahandlers.utils.filtering) filter_galaxy_binary_data() (in module cosinorage.datahandlers.utils.galaxy_binary) filter_galaxy_csv_data() (in module cosinorage.datahandlers.utils.galaxy_csv) filter_generic_data() (in module cosinorage.datahandlers.utils.generic) filter_incomplete_days() (in module cosinorage.datahandlers.utils.filtering) filter_ukb_data() (in module cosinorage.datahandlers.utils.ukb) fit_cosinor() (in module cosinorage.features.utils.cosinor_analysis) G galaxy_file_path (GalaxyDataHandler attribute) GalaxyDataHandler (class in cosinorage.datahandlers.galaxydatahandler) GenericDataHandler (class in cosinorage.datahandlers.genericdatahandler) get_distribution_stats() (BulkWearableFeatures method), [1] get_failed_handlers() (BulkWearableFeatures method), [1] get_feature_correlation_matrix() (BulkWearableFeatures method), [1] get_features() (WearableFeatures method), [1] get_individual_features() (BulkWearableFeatures method), [1] get_meta_data() (DataHandler method) get_ml_data() (DataHandler method) (NHANESDataHandler method) (WearableFeatures method), [1] get_predictions() (CosinorAge method), [1] get_raw_data() (DataHandler method) get_sf_data() (DataHandler method) get_summary_dataframe() (BulkWearableFeatures method), [1] H handlers (BulkWearableFeatures attribute), [1] I individual_features (BulkWearableFeatures attribute), [1] IS() (in module cosinorage.features.utils.nonparam_analysis) IV() (in module cosinorage.features.utils.nonparam_analysis) L L5() (in module cosinorage.features.utils.nonparam_analysis) largest_consecutive_sequence() (in module cosinorage.datahandlers.utils.filtering) M M10() (in module cosinorage.features.utils.nonparam_analysis) meta_dict (DataHandler attribute) (GenericDataHandler attribute) min_max_scaling_exclude_outliers() (in module cosinorage.features.utils.rescaling) ml_data (DataHandler attribute) (GenericDataHandler attribute) (WearableFeatures attribute), [1] model_params_female (CosinorAge attribute), [1] model_params_generic (CosinorAge attribute), [1] model_params_male (CosinorAge attribute), [1] module cosinorage.bioages cosinorage.datahandlers cosinorage.features N nhanes_file_dir (NHANESDataHandler attribute) NHANESDataHandler (class in cosinorage.datahandlers.nhanesdatahandler) NWB() (in module cosinorage.features.utils.sleep_metrics) P plot_cosinor() (in module cosinorage.features) (in module cosinorage.features.utils.visualization) plot_enmo() (in module cosinorage.datahandlers.utils.visualization) plot_non_wear() (in module cosinorage.features) (in module cosinorage.features.utils.visualization) plot_orig_enmo() (in module cosinorage.datahandlers.utils.visualization) plot_orig_enmo_freq() (in module cosinorage.datahandlers.utils.visualization) plot_predictions() (CosinorAge method), [1] plot_sleep_predictions() (in module cosinorage.features) (in module cosinorage.features.utils.visualization) preprocess_args (GalaxyDataHandler attribute) (GenericDataHandler attribute) preprocess_galaxy_binary_data() (in module cosinorage.datahandlers.utils.galaxy_binary) preprocess_galaxy_csv_data() (in module cosinorage.datahandlers.utils.galaxy_csv) preprocess_generic_data() (in module cosinorage.datahandlers.utils.generic) PTA() (in module cosinorage.features.utils.sleep_metrics) Q qa_file_path (UKBDataHandler attribute) R RA() (in module cosinorage.features.utils.nonparam_analysis) raw_data (DataHandler attribute) (GenericDataHandler attribute) read_galaxy_binary_data() (in module cosinorage.datahandlers.utils.galaxy_binary) read_galaxy_csv_data() (in module cosinorage.datahandlers.utils.galaxy_csv) read_generic_xD_data() (in module cosinorage.datahandlers.utils.generic) read_nhanes_data() (in module cosinorage.datahandlers.utils.nhanes) read_ukb_data() (in module cosinorage.datahandlers.utils.ukb) records (CosinorAge attribute), [1] remove_bytes() (in module cosinorage.datahandlers.utils.nhanes) remove_noise() (in module cosinorage.datahandlers.utils.noise_removal) resample_galaxy_binary_data() (in module cosinorage.datahandlers.utils.galaxy_binary) resample_galaxy_csv_data() (in module cosinorage.datahandlers.utils.galaxy_csv) resample_generic_data() (in module cosinorage.datahandlers.utils.generic) resample_nhanes_data() (in module cosinorage.datahandlers.utils.nhanes) resample_ukb_data() (in module cosinorage.datahandlers.utils.ukb) S save_data() (DataHandler method) seqn (NHANESDataHandler attribute) sf_data (DataHandler attribute) (GenericDataHandler attribute) SOL() (in module cosinorage.features.utils.sleep_metrics) SRI() (in module cosinorage.features.utils.sleep_metrics) T time_column (GalaxyDataHandler attribute) (GenericDataHandler attribute) time_format (GenericDataHandler attribute) time_zone (GenericDataHandler attribute) TST() (in module cosinorage.features.utils.sleep_metrics) U ukb_file_dir (UKBDataHandler attribute) UKBDataHandler (class in cosinorage.datahandlers.ukbdatahandler) W WASO() (in module cosinorage.features.utils.sleep_metrics) WearableFeatures (class in cosinorage.features) (class in cosinorage.features.features)